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How to analyze experimental data.

The Lung Microarray Database provides many interesting and exciting ways to analyze your submitted experimental data.

From the main screen click:

Advanced Results Search

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You should now see a screen that allows you to filter for the exact experiments that you are searching for.

Set some filters and press the button:

Data Retrieval and Analysis
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Select some experiments from the list.

Press the button:

Data Retrieval and Analysis
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You are now taken to a screen where you can do some spot filtering and select some annotations.

Press the button:

Proceed to Data Filtering
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This is the primary data filtering screen.

When you are content press the button:

Proceed to Gene Filtering
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Filter genes until you can't stand it anymore and then press the button:

Retrieve Data
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LMD will go to work retrieving and filtering your data as requested.

Please be patient.
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When it has completed - the screen will look something like this.

Notice that one of the links says:

Download PreClustering File
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The PreClustering File looks a bit like this and would allow you to take the data offline for use with your own data analysis and visualization tools.

The other link said:

Clustering and Image Generation

Let's try that.
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Here is where you can set a bunch of clustering options.

Press the button:

Submit Query
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LMD will again go to work.

Patience is a virtue.

When it is complete you will see this screen....
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.... and this screen.

I bet the links do neat things?

PCL will once again give you the pre-clustering file.
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CDT will give you the post-clustering data file.
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GTR is also provided for use with TreeView.
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View broken images will provide you with the following.
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View broken spot images provides:
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View joint broken images provides a side-by-side combination of the two.
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