| The Lung Microarray Database provides many
interesting and exciting ways to view your submitted experimental data.
From the main screen click:
Advanced Results Search (feel free to click on the picture for a larger version) |
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| You should now see a screen that allows you to
filter for the exact experiments that you are searching for. Set some
filters and press the button:
Display Data |
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| You should now see a list of submitted
experiments. The icon table contains a legend to inform you what each of
the experimental links will provide.
To begin with let's click on [data] for a
particular experiment. |
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| You will now see a screen that allows you to
select fields you are interested in, set filter criteria, and sort order.
There is also an option to produce a downloadable file of all the data (for
offline analysis). Once you have done this press the button:
Submit |
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| Data! Wonderful, data! Play with Zoom,
Whole, History.
Once you are done press Back a few times to get back to the
experiment list. |
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When downloading the experimental data, you most likely noticed that there
is a check-box that allows for a downloadable file to be created. Go
back and select this option.
Now - download the file via the link provided.
You are now downloading a Microsoft Excel® file for
further analysis of the data. Technically, this really isn't a
proprietary XLS file. It is simple a tab separated text file, so feel
free to use whatever data analysis program makes you happy. |
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| Here is what the file looks like loaded into
Microsoft Excel®. |
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| Go back to the experiment list again. Now
click on the [view] icon for a specific
experiment.
You will get this screen. This page is a summation area for the
experiment. It also has many interesting analytical links. |
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| Clicking on Data Distribution creates a
histogram of your data range. |
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| Plot Data provides a great way for you
to interactively plot intensity correlation data of almost anything
against anything with regards to a single experiment. |
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| Ratios on Array This is
a powerful tool for looking for spatial bias with regards to your
hybridization. |
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| Channel Intensities allows you to
produce a histogram of relative channel intensities for both normalized and
raw data. |
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| Return the experiment list page. Now, click
on the [array] icon.
You now have a clickable map of your submitted array. Note that the
previous page provided a gridded option of this screen as well. |
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| If you click on a particular spot you will see
a screen like the one to the right. Note: If you are the owner of this
experiment you will also have the option to Flag and Unflag
this spot. |
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| Spot data, glorious spot data. |
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| Selecting the View expression history
link will produce a plot showing the expression history of this spot across
all submitted experiments. |
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